PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.1G274700.1.p
Common NamePRUPE_ppa024080mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ZF-HD
Protein Properties Length: 350aa    MW: 38075.4 Da    PI: 9.4628
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.1G274700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.38.8e-3464121258
         ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                         ++v YkeClkNhAaslGgha+DGCgEfmps++++  ++++lkCaACgCHRnFHRr+++
  Prupe.1G274700.1.p  64 MAVAYKECLKNHAASLGGHALDGCGEFMPSPSSNpMDPTSLKCAACGCHRNFHRRDQH 121
                         5799******************************9********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.9E-2866120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.5E-3168119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.7768119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2268118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.608.3E-28209278IPR009057Homeodomain-like
SuperFamilySSF466896.57E-17211278IPR009057Homeodomain-like
TIGRFAMsTIGR015652.0E-25217273IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDFTSANHLT PTATTIKTPD TDTEPPSPSE PKSISNRSLS FPNGSLKPHH PTIPPPQPQP  60
PPTMAVAYKE CLKNHAASLG GHALDGCGEF MPSPSSNPMD PTSLKCAACG CHRNFHRRDQ  120
HRPKTVLSHH RLLLPAPPTH HHHHSSSPSP TQSPVSSQGP TLSPQSPPPV SHLPPSYFAS  180
PPQMLLALSN GVSGPSDGHH HGLHPTTMKA EKYPNEKKRS RTKFSQEQKE KMNLFAEKVG  240
WRMQRSDERL VEDFCNEVGV RRGVFKVWMH NNKHGLKKRS ERSGDGGERM IISNVKYETS  300
NGDDEGCGRV GFDSIVNAQT TSYNVNATPQ NGGTRASFHL SNNGSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-202182741874ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4262090.0AY426209.1 Prunus salicina clone CPSCT024 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224765.10.0hypothetical protein PRUPE_ppa024080mg
SwissprotQ9SEZ13e-66ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLM5XJ800.0M5XJ80_PRUPE; Uncharacterized protein
STRINGGLYMA07G35760.25e-67(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-58zinc finger homeodomain 1